PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G18630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 1002aa    MW: 112156 Da    PI: 8.788
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G18630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.43.3e-109089553383
                      -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      s  ++l+d+  r W v +    k+  + +t+GWk Fv an+L++gD++ + 
  LPERR02G18630.1 908 S-VIILKDPMKRLWPVIY--YEKPIFVGFTAGWKPFVAANNLQVGDVCKLV 955
                      3.699*************..****************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.124302395IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-17304397IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-15304397IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-8305392No hitNo description
SMARTSM010191.9E-4305395IPR003340B3 DNA binding domain
PfamPF023621.2E-7314392IPR003340B3 DNA binding domain
PROSITE profilePS508638.727874971IPR003340B3 DNA binding domain
SMARTSM010190.003876971IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-10883955IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-11883955IPR015300DNA-binding pseudobarrel domain
CDDcd100177.25E-11885962No hitNo description
PfamPF023621.3E-7907955IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1002 aa     Download sequence    Send to blast
MDGAFQGRGC AERLRSRDKI DEDESCSDDM RIYAGEEKKK KCSYDMKKNV RKDAGKEMSN  60
CGKKKNRTAG SDDAEQRKKK KILNGDNKPK SRKVCTPFFE KARKKMLSTI SQNGPMKKKS  120
NDISDKKKTV PLSVNKNKVR KGEMSNRTSP NTPVAKERKI QHSDSMEMKK KKRDASFVHP  180
GKRTSQIFNT NNKEMKGEMS NRTSPNTPVV KERKIQHSDS MEMKKKKRDA SFVHSGKRTS  240
QIFNTNNKEM KRKVPSTPLR REQKMQEGRS NDKKEAKKAR IIAEGNEKKT CSDQKKKKRK  300
APFAFFKFMC NKFKELLFIP PAVTPSFEDL NNHHVYLEDS EGKSSKIRLS VVDGSLAFYE  360
GWNNFVLEHF INWGDFLLFE YTEESTFSVR VFGPDSCERL HFNGESIRKG TMKKRKERHT  420
LSDDLVSSYS GQDSEGIYDD SHVSGESSRR KEPKITVDVE IVPSNVAAKS INTASETKDP  480
ERVESGVGNE SLMALGNKDK NLGDGECKTR SDSVLCIQEE TRRSEVIIIT DEASSTQENE  540
DTMKQRTSNE ASETHHMPIN TQKEAERVGD DVWHESSVAL NNKMGNMILG KCKNNDVSPI  600
CSTGRTNGSE IIPTTDSIPL AQEDNDREKL STFSCLKEGK STTREPELAA TTPTKCTEIH  660
DLDEDSRQKH QRNSVQVKST IDIDNYPNNG EMNSSGNDSR LYEAPGGSRC LQKWKEDIVS  720
GQAAHDEIGQ VRPEKPQNAG EKFVDNCGPM GQTPVDPRLE SDVTDTCLKS VLTIPIEQLP  780
SPDSVSVSKY GDGSADGNHF FNRKGATAQL QATKEPLKPT CSGGSRQGDK ILVSASRAHQ  840
SELQIPQQEN AKFSCCVTPV ALVPANDELQ DLDDHSLQLC ISSTIQKWIE LPKSVPKAPL  900
NKGLHDRSVI ILKDPMKRLW PVIYYEKPIF VGFTAGWKPF VAANNLQVGD VCKLVKELDE  960
DEPAYQASRK IVVFCCSNNN NVLGCCGWPP GCLAAVLGGL HF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16280KKKNRTAGSDDAEQRKKKK
2294299KKKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624190.10.0PREDICTED: B3 domain-containing protein Os02g0598200
RefseqXP_015624189.10.0PREDICTED: B3 domain-containing protein Os02g0598200
SwissprotQ6K5K20.0Y2982_ORYSJ; B3 domain-containing protein Os02g0598200
TrEMBLA0A0D9VHV40.0A0A0D9VHV4_9ORYZ; Uncharacterized protein
STRINGLOC_Os02g38470.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.16e-10B3 family protein